Ben Ganzfried

Hey,

I just googled my error and many things came up.  I followed the leads and
read the ?read.delim page; I tried changing header = TRUE, and row.namesTRUE-- but I've still been having trouble fixing it, so I would greatly
appreciate any help you can provide.  Here is my code:

rm(list=ls())
source("../../functions.R")

uncurated <- read.csv("../uncurated/GSE3141_full_pdata.csv", as.is
=TRUE,row.names=1)
celfile.dir <- "../../../DATA/GSE3141/RAW"

##initial creation of curated dataframe
curated <- initialCuratedDF(rownames(uncurated),
template.filename="template.csv")

The error occurs when I run this line:

Error in read.table(file = file, header = header, sep = sep, quote = quote,
:
  more columns than column name

I would greatly appreciate any help.

Thanks!

Ben

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Hey,

I keep getting the following warning:

Warning in data(GSE19829 - GPL570_eset) :
  data set ‘GSE19829 - GPL570_eset’ not found

+   summary(GSE19829-GPL570_eset$vital_status)
+  }
Error in summary(GSE19829 - GPL570_eset$vital_status) :
  object 'GSE19829' not found
Execution halted

This error does not happen on other of my other .Rd files.  None of the
other .Rd files have a "-" character in their title.  for example, the
other files have the following:

I think the issue is the "-" character, but I'm not sure.  Does anyone know
if this is the case?  And if so, how do I fix it?  If not, any other
suggestions?

Much thanks!

Ben

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Hi--

I googled the above error and found previous postings about this error on
the list.  I was having a little difficulty implementing the advice though.
The suggestions were to use: traceback() and checkRd().  I'm using R in
the directory in which the .Rd file with the problem is located, but I'm
having difficulty figuring out how to proceed.  I've looked through the
help pages for traceback() and checkRd(), and would greatly appreciate any
advice for how to find the errors and fix them.

The specific error I am getting when trying to check my package is:

* checking Rd files ... WARNING
Error in Rd[[which]] : subscript out of bounds

problem found in ‘curatedData-package.Rd’

Thanks in advance!

Ben

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